Class: Comment Annotation (CommentAnnotation)

An explanatory or critical comment, or other in-context information (e.g., pattern, motif, link), that has been associated with data or other types of information.

URI: https://example.org/usdm/v4/linkml/CommentAnnotation

 classDiagram
    class CommentAnnotation
    click CommentAnnotation href "../../classes/CommentAnnotation/"
      CommentAnnotation : codes





        CommentAnnotation --> "*" Code : codes
        click Code href "../../classes/Code/"



      CommentAnnotation : extensionAttributes





        CommentAnnotation --> "*" ExtensionAttribute : extensionAttributes
        click ExtensionAttribute href "../../classes/ExtensionAttribute/"



      CommentAnnotation : id

      CommentAnnotation : text

Class Properties

Property Value
Class URI usdm:CommentAnnotation

Slots

Name Cardinality and Range Description Inheritance
id 1
string		 direct
text 1
string		 An instance of unstructured text that represents the comment annotation. direct
codes *
Code		 A symbol or combination of symbols which is assigned to the comment annotation. direct
extensionAttributes *
ExtensionAttribute		 direct

Usages

used by used in type used
Abbreviation notes range CommentAnnotation
Activity notes range CommentAnnotation
AdministrableProduct notes range CommentAnnotation
Administration notes range CommentAnnotation
AnalysisPopulation notes range CommentAnnotation
BiomedicalConcept notes range CommentAnnotation
BiomedicalConceptCategory notes range CommentAnnotation
BiomedicalConceptProperty notes range CommentAnnotation
BiomedicalConceptSurrogate notes range CommentAnnotation
Characteristic notes range CommentAnnotation
Condition notes range CommentAnnotation
EligibilityCriterion notes range CommentAnnotation
EligibilityCriterionItem notes range CommentAnnotation
Encounter notes range CommentAnnotation
Endpoint notes range CommentAnnotation
Estimand notes range CommentAnnotation
Indication notes range CommentAnnotation
IntercurrentEvent notes range CommentAnnotation
InterventionalStudyDesign notes range CommentAnnotation
MedicalDevice notes range CommentAnnotation
Objective notes range CommentAnnotation
ObservationalStudyDesign notes range CommentAnnotation
PopulationDefinition notes range CommentAnnotation
Procedure notes range CommentAnnotation
StudyAmendment notes range CommentAnnotation
StudyAmendmentImpact notes range CommentAnnotation
StudyArm notes range CommentAnnotation
StudyCohort notes range CommentAnnotation
StudyDefinitionDocument notes range CommentAnnotation
StudyDefinitionDocumentVersion notes range CommentAnnotation
StudyDesign notes range CommentAnnotation
StudyDesignPopulation notes range CommentAnnotation
StudyElement notes range CommentAnnotation
StudyEpoch notes range CommentAnnotation
StudyIntervention notes range CommentAnnotation
StudyRole notes range CommentAnnotation
StudyVersion notes range CommentAnnotation
SyntaxTemplate notes range CommentAnnotation

Identifier and Mapping Information

Schema Source

  • from schema: https://example.org/usdm/v4/linkml

Mappings

Mapping Type Mapped Value
self https://example.org/usdm/v4/linkml/CommentAnnotation
native https://example.org/usdm/v4/linkml/CommentAnnotation
exact ncit:C44272

Examples

Example: CommentAnnotation-01-Minimal-Instance

id: CommentAnnot_Neuro_001
text: Finding represents a baseline tremor and is not considered an adverse event.

Example: CommentAnnotation-02-Detailed-Instance

id: CommentAnnot_Deviation_001
text: Fasting state was not maintained for the required 8 hours prior to the glucose check.
codes:
  - id: Code_Protocol_Deviation
    code: C50996
    codeSystem: ncit
    codeSystemVersion: 24.04e
    decode: Protocol Deviation

LinkML Source

Direct

name: CommentAnnotation
description: An explanatory or critical comment, or other in-context information (e.g.,
  pattern, motif, link), that has been associated with data or other types of information.
title: Comment Annotation
from_schema: https://example.org/usdm/v4/linkml
exact_mappings:
- ncit:C44272
rank: 1000
attributes:
  id:
    name: id
    from_schema: https://example.org/usdm/v4/linkml
    identifier: true
    domain_of:
    - Abbreviation
    - Activity
    - Address
    - AdministrableProduct
    - AdministrableProductProperty
    - Administration
    - AliasCode
    - AnalysisPopulation
    - AssignedPerson
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - BiomedicalConceptSurrogate
    - BiospecimenRetention
    - Code
    - CommentAnnotation
    - ConditionAssignment
    - DocumentContentReference
    - Duration
    - EligibilityCriterion
    - Encounter
    - Estimand
    - ExtensionAttribute
    - ExtensionClass
    - GeographicScope
    - GovernanceDate
    - Identifier
    - Indication
    - Ingredient
    - Masking
    - MedicalDevice
    - NarrativeContent
    - NarrativeContentItem
    - Organization
    - ParameterMap
    - PersonName
    - PopulationDefinition
    - Procedure
    - ProductOrganizationRole
    - QuantityRange
    - ResponseCode
    - ScheduleTimeline
    - ScheduleTimelineExit
    - ScheduledInstance
    - Strength
    - Study
    - StudyAmendment
    - StudyAmendmentImpact
    - StudyAmendmentReason
    - StudyArm
    - StudyCell
    - StudyChange
    - StudyDefinitionDocument
    - StudyDefinitionDocumentVersion
    - StudyDesign
    - StudyElement
    - StudyEpoch
    - StudyIntervention
    - StudyRole
    - StudySite
    - StudyTitle
    - StudyVersion
    - SubjectEnrollment
    - Substance
    - SyntaxTemplate
    - SyntaxTemplateDictionary
    - Timing
    - TransitionRule
    range: string
    required: true
  text:
    name: text
    description: An instance of unstructured text that represents the comment annotation.
    title: Comment Annotation Text
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C215555
    domain_of:
    - Address
    - AdministrableProductProperty
    - AnalysisPopulation
    - CommentAnnotation
    - Duration
    - Identifier
    - Masking
    - NarrativeContentItem
    - PersonName
    - StudyAmendmentImpact
    - StudyTitle
    - SyntaxTemplate
    - TransitionRule
    range: string
    required: true
  codes:
    name: codes
    description: A symbol or combination of symbols which is assigned to the comment
      annotation.
    title: Comment Annotation Code
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C215556
    rank: 1000
    domain_of:
    - CommentAnnotation
    - Indication
    - StudyIntervention
    - Substance
    range: Code
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
  extensionAttributes:
    name: extensionAttributes
    from_schema: https://example.org/usdm/v4/linkml
    domain_of:
    - Abbreviation
    - Activity
    - Address
    - AdministrableProduct
    - AdministrableProductIdentifier
    - AdministrableProductProperty
    - Administration
    - AliasCode
    - AnalysisPopulation
    - AssignedPerson
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - BiomedicalConceptSurrogate
    - BiospecimenRetention
    - Characteristic
    - Code
    - CommentAnnotation
    - Condition
    - ConditionAssignment
    - DocumentContentReference
    - Duration
    - EligibilityCriterion
    - EligibilityCriterionItem
    - Encounter
    - Endpoint
    - Estimand
    - ExtensionAttribute
    - ExtensionClass
    - GeographicScope
    - GovernanceDate
    - Indication
    - Ingredient
    - IntercurrentEvent
    - InterventionalStudyDesign
    - Masking
    - MedicalDevice
    - MedicalDeviceIdentifier
    - NarrativeContent
    - NarrativeContentItem
    - Objective
    - ObservationalStudyDesign
    - Organization
    - ParameterMap
    - PersonName
    - Procedure
    - ProductOrganizationRole
    - Quantity
    - Range
    - ReferenceIdentifier
    - ResponseCode
    - ScheduleTimeline
    - ScheduleTimelineExit
    - ScheduledActivityInstance
    - ScheduledDecisionInstance
    - Strength
    - Study
    - StudyAmendment
    - StudyAmendmentImpact
    - StudyAmendmentReason
    - StudyArm
    - StudyCell
    - StudyChange
    - StudyCohort
    - StudyDefinitionDocument
    - StudyDefinitionDocumentVersion
    - StudyDesignPopulation
    - StudyElement
    - StudyEpoch
    - StudyIdentifier
    - StudyIntervention
    - StudyRole
    - StudySite
    - StudyTitle
    - StudyVersion
    - SubjectEnrollment
    - Substance
    - SyntaxTemplateDictionary
    - Timing
    - TransitionRule
    range: ExtensionAttribute
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
class_uri: usdm:CommentAnnotation

Induced

name: CommentAnnotation
description: An explanatory or critical comment, or other in-context information (e.g.,
  pattern, motif, link), that has been associated with data or other types of information.
title: Comment Annotation
from_schema: https://example.org/usdm/v4/linkml
exact_mappings:
- ncit:C44272
rank: 1000
attributes:
  id:
    name: id
    from_schema: https://example.org/usdm/v4/linkml
    identifier: true
    alias: id
    owner: CommentAnnotation
    domain_of:
    - Abbreviation
    - Activity
    - Address
    - AdministrableProduct
    - AdministrableProductProperty
    - Administration
    - AliasCode
    - AnalysisPopulation
    - AssignedPerson
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - BiomedicalConceptSurrogate
    - BiospecimenRetention
    - Code
    - CommentAnnotation
    - ConditionAssignment
    - DocumentContentReference
    - Duration
    - EligibilityCriterion
    - Encounter
    - Estimand
    - ExtensionAttribute
    - ExtensionClass
    - GeographicScope
    - GovernanceDate
    - Identifier
    - Indication
    - Ingredient
    - Masking
    - MedicalDevice
    - NarrativeContent
    - NarrativeContentItem
    - Organization
    - ParameterMap
    - PersonName
    - PopulationDefinition
    - Procedure
    - ProductOrganizationRole
    - QuantityRange
    - ResponseCode
    - ScheduleTimeline
    - ScheduleTimelineExit
    - ScheduledInstance
    - Strength
    - Study
    - StudyAmendment
    - StudyAmendmentImpact
    - StudyAmendmentReason
    - StudyArm
    - StudyCell
    - StudyChange
    - StudyDefinitionDocument
    - StudyDefinitionDocumentVersion
    - StudyDesign
    - StudyElement
    - StudyEpoch
    - StudyIntervention
    - StudyRole
    - StudySite
    - StudyTitle
    - StudyVersion
    - SubjectEnrollment
    - Substance
    - SyntaxTemplate
    - SyntaxTemplateDictionary
    - Timing
    - TransitionRule
    range: string
    required: true
  text:
    name: text
    description: An instance of unstructured text that represents the comment annotation.
    title: Comment Annotation Text
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C215555
    alias: text
    owner: CommentAnnotation
    domain_of:
    - Address
    - AdministrableProductProperty
    - AnalysisPopulation
    - CommentAnnotation
    - Duration
    - Identifier
    - Masking
    - NarrativeContentItem
    - PersonName
    - StudyAmendmentImpact
    - StudyTitle
    - SyntaxTemplate
    - TransitionRule
    range: string
    required: true
  codes:
    name: codes
    description: A symbol or combination of symbols which is assigned to the comment
      annotation.
    title: Comment Annotation Code
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C215556
    rank: 1000
    alias: codes
    owner: CommentAnnotation
    domain_of:
    - CommentAnnotation
    - Indication
    - StudyIntervention
    - Substance
    range: Code
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
  extensionAttributes:
    name: extensionAttributes
    from_schema: https://example.org/usdm/v4/linkml
    alias: extensionAttributes
    owner: CommentAnnotation
    domain_of:
    - Abbreviation
    - Activity
    - Address
    - AdministrableProduct
    - AdministrableProductIdentifier
    - AdministrableProductProperty
    - Administration
    - AliasCode
    - AnalysisPopulation
    - AssignedPerson
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - BiomedicalConceptSurrogate
    - BiospecimenRetention
    - Characteristic
    - Code
    - CommentAnnotation
    - Condition
    - ConditionAssignment
    - DocumentContentReference
    - Duration
    - EligibilityCriterion
    - EligibilityCriterionItem
    - Encounter
    - Endpoint
    - Estimand
    - ExtensionAttribute
    - ExtensionClass
    - GeographicScope
    - GovernanceDate
    - Indication
    - Ingredient
    - IntercurrentEvent
    - InterventionalStudyDesign
    - Masking
    - MedicalDevice
    - MedicalDeviceIdentifier
    - NarrativeContent
    - NarrativeContentItem
    - Objective
    - ObservationalStudyDesign
    - Organization
    - ParameterMap
    - PersonName
    - Procedure
    - ProductOrganizationRole
    - Quantity
    - Range
    - ReferenceIdentifier
    - ResponseCode
    - ScheduleTimeline
    - ScheduleTimelineExit
    - ScheduledActivityInstance
    - ScheduledDecisionInstance
    - Strength
    - Study
    - StudyAmendment
    - StudyAmendmentImpact
    - StudyAmendmentReason
    - StudyArm
    - StudyCell
    - StudyChange
    - StudyCohort
    - StudyDefinitionDocument
    - StudyDefinitionDocumentVersion
    - StudyDesignPopulation
    - StudyElement
    - StudyEpoch
    - StudyIdentifier
    - StudyIntervention
    - StudyRole
    - StudySite
    - StudyTitle
    - StudyVersion
    - SubjectEnrollment
    - Substance
    - SyntaxTemplateDictionary
    - Timing
    - TransitionRule
    range: ExtensionAttribute
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
class_uri: usdm:CommentAnnotation