Class: Biomedical Concept Category (BiomedicalConceptCategory)

A grouping of biomedical concepts based on some commonality or by user defined characteristics.

URI: https://example.org/usdm/v4/linkml/BiomedicalConceptCategory

 classDiagram
    class BiomedicalConceptCategory
    click BiomedicalConceptCategory href "../../classes/BiomedicalConceptCategory/"
      BiomedicalConceptCategory : childIds





        BiomedicalConceptCategory --> "*" BiomedicalConceptCategory : childIds
        click BiomedicalConceptCategory href "../../classes/BiomedicalConceptCategory/"



      BiomedicalConceptCategory : code





        BiomedicalConceptCategory --> "0..1" AliasCode : code
        click AliasCode href "../../classes/AliasCode/"



      BiomedicalConceptCategory : description

      BiomedicalConceptCategory : extensionAttributes





        BiomedicalConceptCategory --> "*" ExtensionAttribute : extensionAttributes
        click ExtensionAttribute href "../../classes/ExtensionAttribute/"



      BiomedicalConceptCategory : id

      BiomedicalConceptCategory : label

      BiomedicalConceptCategory : memberIds





        BiomedicalConceptCategory --> "*" BiomedicalConcept : memberIds
        click BiomedicalConcept href "../../classes/BiomedicalConcept/"



      BiomedicalConceptCategory : name

      BiomedicalConceptCategory : notes





        BiomedicalConceptCategory --> "*" CommentAnnotation : notes
        click CommentAnnotation href "../../classes/CommentAnnotation/"

Class Properties

Property Value
Class URI usdm:BiomedicalConceptCategory

Slots

Name Cardinality and Range Description Inheritance
id 1
string		 direct
name 1
string		 The literal identifier (i.e., distinctive designation) of the biomedical concept category. direct
label 0..1
string		 The short descriptive designation for the biomedical concept category. direct
description 0..1
string		 A narrative representation of the biomedical concept category. direct
code 0..1
AliasCode		 A symbol or combination of symbols which is assigned to the biomedical concept category. direct
notes *
CommentAnnotation		 A brief written record relevant to the biomedical concept category. direct
memberIds *
BiomedicalConcept		 A USDM relationship between the BiomedicalConceptCategory and BiomedicalConcept classes which identifies the set of biomedical concept members associated with the biomedical concept category. direct
childIds *
BiomedicalConceptCategory		 A USDM relationship within the BiomedicalConceptCategory class which identifies the set of child categories of a biomedical concept. direct
extensionAttributes *
ExtensionAttribute		 direct

Usages

used by used in type used
Activity bcCategoryIds range BiomedicalConceptCategory
BiomedicalConceptCategory childIds range BiomedicalConceptCategory
Condition appliesToIds any_of[range] BiomedicalConceptCategory
StudyVersion bcCategories range BiomedicalConceptCategory

Identifier and Mapping Information

Schema Source

  • from schema: https://example.org/usdm/v4/linkml

Mappings

Mapping Type Mapped Value
self https://example.org/usdm/v4/linkml/BiomedicalConceptCategory
native https://example.org/usdm/v4/linkml/BiomedicalConceptCategory
exact ncit:C201346

LinkML Source

Direct

name: BiomedicalConceptCategory
description: A grouping of biomedical concepts based on some commonality or by user
  defined characteristics.
title: Biomedical Concept Category
from_schema: https://example.org/usdm/v4/linkml
exact_mappings:
- ncit:C201346
rank: 1000
attributes:
  id:
    name: id
    from_schema: https://example.org/usdm/v4/linkml
    identifier: true
    domain_of:
    - Abbreviation
    - Activity
    - Address
    - AdministrableProduct
    - AdministrableProductProperty
    - Administration
    - AliasCode
    - AnalysisPopulation
    - AssignedPerson
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - BiomedicalConceptSurrogate
    - BiospecimenRetention
    - Code
    - CommentAnnotation
    - ConditionAssignment
    - DocumentContentReference
    - Duration
    - EligibilityCriterion
    - Encounter
    - Estimand
    - ExtensionAttribute
    - ExtensionClass
    - GeographicScope
    - GovernanceDate
    - Identifier
    - Indication
    - Ingredient
    - Masking
    - MedicalDevice
    - NarrativeContent
    - NarrativeContentItem
    - Organization
    - ParameterMap
    - PersonName
    - PopulationDefinition
    - Procedure
    - ProductOrganizationRole
    - QuantityRange
    - ResponseCode
    - ScheduleTimeline
    - ScheduleTimelineExit
    - ScheduledInstance
    - Strength
    - Study
    - StudyAmendment
    - StudyAmendmentImpact
    - StudyAmendmentReason
    - StudyArm
    - StudyCell
    - StudyChange
    - StudyDefinitionDocument
    - StudyDefinitionDocumentVersion
    - StudyDesign
    - StudyElement
    - StudyEpoch
    - StudyIntervention
    - StudyRole
    - StudySite
    - StudyTitle
    - StudyVersion
    - SubjectEnrollment
    - Substance
    - SyntaxTemplate
    - SyntaxTemplateDictionary
    - Timing
    - TransitionRule
    range: string
    required: true
  name:
    name: name
    description: The literal identifier (i.e., distinctive designation) of the biomedical
      concept category.
    title: Biomedical Concept Category Name
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C201317
    domain_of:
    - Activity
    - AdministrableProduct
    - AdministrableProductProperty
    - Administration
    - AnalysisPopulation
    - AssignedPerson
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - BiomedicalConceptSurrogate
    - BiospecimenRetention
    - EligibilityCriterion
    - Encounter
    - Estimand
    - GovernanceDate
    - Indication
    - MedicalDevice
    - NarrativeContent
    - NarrativeContentItem
    - Organization
    - PopulationDefinition
    - Procedure
    - ProductOrganizationRole
    - ResponseCode
    - ScheduleTimeline
    - ScheduledInstance
    - Strength
    - Study
    - StudyAmendment
    - StudyArm
    - StudyChange
    - StudyDefinitionDocument
    - StudyDesign
    - StudyElement
    - StudyEpoch
    - StudyIntervention
    - StudyRole
    - StudySite
    - SubjectEnrollment
    - Substance
    - SyntaxTemplate
    - SyntaxTemplateDictionary
    - Timing
    - TransitionRule
    range: string
    required: true
  label:
    name: label
    description: The short descriptive designation for the biomedical concept category.
    title: Biomedical Concept Category Label
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C207471
    domain_of:
    - Activity
    - AdministrableProduct
    - Administration
    - AnalysisPopulation
    - AssignedPerson
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - BiomedicalConceptSurrogate
    - BiospecimenRetention
    - EligibilityCriterion
    - Encounter
    - Estimand
    - GovernanceDate
    - Indication
    - MedicalDevice
    - Organization
    - PopulationDefinition
    - Procedure
    - ProductOrganizationRole
    - ResponseCode
    - ScheduleTimeline
    - ScheduledInstance
    - Strength
    - Study
    - StudyAmendment
    - StudyArm
    - StudyChange
    - StudyDefinitionDocument
    - StudyDesign
    - StudyElement
    - StudyEpoch
    - StudyIntervention
    - StudyRole
    - StudySite
    - SubjectEnrollment
    - Substance
    - SyntaxTemplate
    - SyntaxTemplateDictionary
    - Timing
    - TransitionRule
    range: string
    required: false
  description:
    name: description
    description: A narrative representation of the biomedical concept category.
    title: Biomedical Concept Category Description
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C201316
    domain_of:
    - Activity
    - AdministrableProduct
    - Administration
    - AnalysisPopulation
    - AssignedPerson
    - BiomedicalConceptCategory
    - BiomedicalConceptSurrogate
    - BiospecimenRetention
    - EligibilityCriterion
    - Encounter
    - Estimand
    - GovernanceDate
    - Indication
    - MedicalDevice
    - PopulationDefinition
    - Procedure
    - ProductOrganizationRole
    - ScheduleTimeline
    - ScheduledInstance
    - Strength
    - Study
    - StudyAmendment
    - StudyArm
    - StudyChange
    - StudyDefinitionDocument
    - StudyDesign
    - StudyElement
    - StudyEpoch
    - StudyIntervention
    - StudyRole
    - StudySite
    - SubjectEnrollment
    - Substance
    - SyntaxTemplate
    - SyntaxTemplateDictionary
    - Timing
    - TransitionRule
    range: string
    required: false
  code:
    name: code
    description: A symbol or combination of symbols which is assigned to the biomedical
      concept category.
    title: Biomedical Concept Category Code
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C201315
    domain_of:
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - Code
    - GeographicScope
    - Procedure
    - ProductOrganizationRole
    - ResponseCode
    - StudyAmendmentReason
    - StudyRole
    range: AliasCode
    required: false
    inlined: true
  notes:
    name: notes
    description: A brief written record relevant to the biomedical concept category.
    title: Biomedical Concept Category Notes
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C215533
    domain_of:
    - Abbreviation
    - Activity
    - AdministrableProduct
    - Administration
    - AnalysisPopulation
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - BiomedicalConceptSurrogate
    - EligibilityCriterion
    - Encounter
    - Estimand
    - Indication
    - MedicalDevice
    - PopulationDefinition
    - Procedure
    - StudyAmendment
    - StudyAmendmentImpact
    - StudyArm
    - StudyDefinitionDocument
    - StudyDefinitionDocumentVersion
    - StudyDesign
    - StudyElement
    - StudyEpoch
    - StudyIntervention
    - StudyRole
    - StudyVersion
    - SyntaxTemplate
    range: CommentAnnotation
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
  memberIds:
    name: memberIds
    description: A USDM relationship between the BiomedicalConceptCategory and BiomedicalConcept
      classes which identifies the set of biomedical concept members associated with
      the biomedical concept category.
    from_schema: https://example.org/usdm/v4/linkml
    rank: 1000
    domain_of:
    - BiomedicalConceptCategory
    range: BiomedicalConcept
    required: false
    multivalued: true
    inlined: false
  childIds:
    name: childIds
    description: A USDM relationship within the BiomedicalConceptCategory class which
      identifies the set of child categories of a biomedical concept.
    from_schema: https://example.org/usdm/v4/linkml
    domain_of:
    - Activity
    - BiomedicalConceptCategory
    - NarrativeContent
    - StudyDefinitionDocument
    range: BiomedicalConceptCategory
    required: false
    multivalued: true
    inlined: false
  extensionAttributes:
    name: extensionAttributes
    from_schema: https://example.org/usdm/v4/linkml
    domain_of:
    - Abbreviation
    - Activity
    - Address
    - AdministrableProduct
    - AdministrableProductIdentifier
    - AdministrableProductProperty
    - Administration
    - AliasCode
    - AnalysisPopulation
    - AssignedPerson
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - BiomedicalConceptSurrogate
    - BiospecimenRetention
    - Characteristic
    - Code
    - CommentAnnotation
    - Condition
    - ConditionAssignment
    - DocumentContentReference
    - Duration
    - EligibilityCriterion
    - EligibilityCriterionItem
    - Encounter
    - Endpoint
    - Estimand
    - ExtensionAttribute
    - ExtensionClass
    - GeographicScope
    - GovernanceDate
    - Indication
    - Ingredient
    - IntercurrentEvent
    - InterventionalStudyDesign
    - Masking
    - MedicalDevice
    - MedicalDeviceIdentifier
    - NarrativeContent
    - NarrativeContentItem
    - Objective
    - ObservationalStudyDesign
    - Organization
    - ParameterMap
    - PersonName
    - Procedure
    - ProductOrganizationRole
    - Quantity
    - Range
    - ReferenceIdentifier
    - ResponseCode
    - ScheduleTimeline
    - ScheduleTimelineExit
    - ScheduledActivityInstance
    - ScheduledDecisionInstance
    - Strength
    - Study
    - StudyAmendment
    - StudyAmendmentImpact
    - StudyAmendmentReason
    - StudyArm
    - StudyCell
    - StudyChange
    - StudyCohort
    - StudyDefinitionDocument
    - StudyDefinitionDocumentVersion
    - StudyDesignPopulation
    - StudyElement
    - StudyEpoch
    - StudyIdentifier
    - StudyIntervention
    - StudyRole
    - StudySite
    - StudyTitle
    - StudyVersion
    - SubjectEnrollment
    - Substance
    - SyntaxTemplateDictionary
    - Timing
    - TransitionRule
    range: ExtensionAttribute
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
class_uri: usdm:BiomedicalConceptCategory

Induced

name: BiomedicalConceptCategory
description: A grouping of biomedical concepts based on some commonality or by user
  defined characteristics.
title: Biomedical Concept Category
from_schema: https://example.org/usdm/v4/linkml
exact_mappings:
- ncit:C201346
rank: 1000
attributes:
  id:
    name: id
    from_schema: https://example.org/usdm/v4/linkml
    identifier: true
    alias: id
    owner: BiomedicalConceptCategory
    domain_of:
    - Abbreviation
    - Activity
    - Address
    - AdministrableProduct
    - AdministrableProductProperty
    - Administration
    - AliasCode
    - AnalysisPopulation
    - AssignedPerson
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - BiomedicalConceptSurrogate
    - BiospecimenRetention
    - Code
    - CommentAnnotation
    - ConditionAssignment
    - DocumentContentReference
    - Duration
    - EligibilityCriterion
    - Encounter
    - Estimand
    - ExtensionAttribute
    - ExtensionClass
    - GeographicScope
    - GovernanceDate
    - Identifier
    - Indication
    - Ingredient
    - Masking
    - MedicalDevice
    - NarrativeContent
    - NarrativeContentItem
    - Organization
    - ParameterMap
    - PersonName
    - PopulationDefinition
    - Procedure
    - ProductOrganizationRole
    - QuantityRange
    - ResponseCode
    - ScheduleTimeline
    - ScheduleTimelineExit
    - ScheduledInstance
    - Strength
    - Study
    - StudyAmendment
    - StudyAmendmentImpact
    - StudyAmendmentReason
    - StudyArm
    - StudyCell
    - StudyChange
    - StudyDefinitionDocument
    - StudyDefinitionDocumentVersion
    - StudyDesign
    - StudyElement
    - StudyEpoch
    - StudyIntervention
    - StudyRole
    - StudySite
    - StudyTitle
    - StudyVersion
    - SubjectEnrollment
    - Substance
    - SyntaxTemplate
    - SyntaxTemplateDictionary
    - Timing
    - TransitionRule
    range: string
    required: true
  name:
    name: name
    description: The literal identifier (i.e., distinctive designation) of the biomedical
      concept category.
    title: Biomedical Concept Category Name
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C201317
    alias: name
    owner: BiomedicalConceptCategory
    domain_of:
    - Activity
    - AdministrableProduct
    - AdministrableProductProperty
    - Administration
    - AnalysisPopulation
    - AssignedPerson
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - BiomedicalConceptSurrogate
    - BiospecimenRetention
    - EligibilityCriterion
    - Encounter
    - Estimand
    - GovernanceDate
    - Indication
    - MedicalDevice
    - NarrativeContent
    - NarrativeContentItem
    - Organization
    - PopulationDefinition
    - Procedure
    - ProductOrganizationRole
    - ResponseCode
    - ScheduleTimeline
    - ScheduledInstance
    - Strength
    - Study
    - StudyAmendment
    - StudyArm
    - StudyChange
    - StudyDefinitionDocument
    - StudyDesign
    - StudyElement
    - StudyEpoch
    - StudyIntervention
    - StudyRole
    - StudySite
    - SubjectEnrollment
    - Substance
    - SyntaxTemplate
    - SyntaxTemplateDictionary
    - Timing
    - TransitionRule
    range: string
    required: true
  label:
    name: label
    description: The short descriptive designation for the biomedical concept category.
    title: Biomedical Concept Category Label
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C207471
    alias: label
    owner: BiomedicalConceptCategory
    domain_of:
    - Activity
    - AdministrableProduct
    - Administration
    - AnalysisPopulation
    - AssignedPerson
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - BiomedicalConceptSurrogate
    - BiospecimenRetention
    - EligibilityCriterion
    - Encounter
    - Estimand
    - GovernanceDate
    - Indication
    - MedicalDevice
    - Organization
    - PopulationDefinition
    - Procedure
    - ProductOrganizationRole
    - ResponseCode
    - ScheduleTimeline
    - ScheduledInstance
    - Strength
    - Study
    - StudyAmendment
    - StudyArm
    - StudyChange
    - StudyDefinitionDocument
    - StudyDesign
    - StudyElement
    - StudyEpoch
    - StudyIntervention
    - StudyRole
    - StudySite
    - SubjectEnrollment
    - Substance
    - SyntaxTemplate
    - SyntaxTemplateDictionary
    - Timing
    - TransitionRule
    range: string
    required: false
  description:
    name: description
    description: A narrative representation of the biomedical concept category.
    title: Biomedical Concept Category Description
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C201316
    alias: description
    owner: BiomedicalConceptCategory
    domain_of:
    - Activity
    - AdministrableProduct
    - Administration
    - AnalysisPopulation
    - AssignedPerson
    - BiomedicalConceptCategory
    - BiomedicalConceptSurrogate
    - BiospecimenRetention
    - EligibilityCriterion
    - Encounter
    - Estimand
    - GovernanceDate
    - Indication
    - MedicalDevice
    - PopulationDefinition
    - Procedure
    - ProductOrganizationRole
    - ScheduleTimeline
    - ScheduledInstance
    - Strength
    - Study
    - StudyAmendment
    - StudyArm
    - StudyChange
    - StudyDefinitionDocument
    - StudyDesign
    - StudyElement
    - StudyEpoch
    - StudyIntervention
    - StudyRole
    - StudySite
    - SubjectEnrollment
    - Substance
    - SyntaxTemplate
    - SyntaxTemplateDictionary
    - Timing
    - TransitionRule
    range: string
    required: false
  code:
    name: code
    description: A symbol or combination of symbols which is assigned to the biomedical
      concept category.
    title: Biomedical Concept Category Code
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C201315
    alias: code
    owner: BiomedicalConceptCategory
    domain_of:
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - Code
    - GeographicScope
    - Procedure
    - ProductOrganizationRole
    - ResponseCode
    - StudyAmendmentReason
    - StudyRole
    range: AliasCode
    required: false
    inlined: true
  notes:
    name: notes
    description: A brief written record relevant to the biomedical concept category.
    title: Biomedical Concept Category Notes
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C215533
    alias: notes
    owner: BiomedicalConceptCategory
    domain_of:
    - Abbreviation
    - Activity
    - AdministrableProduct
    - Administration
    - AnalysisPopulation
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - BiomedicalConceptSurrogate
    - EligibilityCriterion
    - Encounter
    - Estimand
    - Indication
    - MedicalDevice
    - PopulationDefinition
    - Procedure
    - StudyAmendment
    - StudyAmendmentImpact
    - StudyArm
    - StudyDefinitionDocument
    - StudyDefinitionDocumentVersion
    - StudyDesign
    - StudyElement
    - StudyEpoch
    - StudyIntervention
    - StudyRole
    - StudyVersion
    - SyntaxTemplate
    range: CommentAnnotation
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
  memberIds:
    name: memberIds
    description: A USDM relationship between the BiomedicalConceptCategory and BiomedicalConcept
      classes which identifies the set of biomedical concept members associated with
      the biomedical concept category.
    from_schema: https://example.org/usdm/v4/linkml
    rank: 1000
    alias: memberIds
    owner: BiomedicalConceptCategory
    domain_of:
    - BiomedicalConceptCategory
    range: BiomedicalConcept
    required: false
    multivalued: true
    inlined: false
  childIds:
    name: childIds
    description: A USDM relationship within the BiomedicalConceptCategory class which
      identifies the set of child categories of a biomedical concept.
    from_schema: https://example.org/usdm/v4/linkml
    alias: childIds
    owner: BiomedicalConceptCategory
    domain_of:
    - Activity
    - BiomedicalConceptCategory
    - NarrativeContent
    - StudyDefinitionDocument
    range: BiomedicalConceptCategory
    required: false
    multivalued: true
    inlined: false
  extensionAttributes:
    name: extensionAttributes
    from_schema: https://example.org/usdm/v4/linkml
    alias: extensionAttributes
    owner: BiomedicalConceptCategory
    domain_of:
    - Abbreviation
    - Activity
    - Address
    - AdministrableProduct
    - AdministrableProductIdentifier
    - AdministrableProductProperty
    - Administration
    - AliasCode
    - AnalysisPopulation
    - AssignedPerson
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - BiomedicalConceptSurrogate
    - BiospecimenRetention
    - Characteristic
    - Code
    - CommentAnnotation
    - Condition
    - ConditionAssignment
    - DocumentContentReference
    - Duration
    - EligibilityCriterion
    - EligibilityCriterionItem
    - Encounter
    - Endpoint
    - Estimand
    - ExtensionAttribute
    - ExtensionClass
    - GeographicScope
    - GovernanceDate
    - Indication
    - Ingredient
    - IntercurrentEvent
    - InterventionalStudyDesign
    - Masking
    - MedicalDevice
    - MedicalDeviceIdentifier
    - NarrativeContent
    - NarrativeContentItem
    - Objective
    - ObservationalStudyDesign
    - Organization
    - ParameterMap
    - PersonName
    - Procedure
    - ProductOrganizationRole
    - Quantity
    - Range
    - ReferenceIdentifier
    - ResponseCode
    - ScheduleTimeline
    - ScheduleTimelineExit
    - ScheduledActivityInstance
    - ScheduledDecisionInstance
    - Strength
    - Study
    - StudyAmendment
    - StudyAmendmentImpact
    - StudyAmendmentReason
    - StudyArm
    - StudyCell
    - StudyChange
    - StudyCohort
    - StudyDefinitionDocument
    - StudyDefinitionDocumentVersion
    - StudyDesignPopulation
    - StudyElement
    - StudyEpoch
    - StudyIdentifier
    - StudyIntervention
    - StudyRole
    - StudySite
    - StudyTitle
    - StudyVersion
    - SubjectEnrollment
    - Substance
    - SyntaxTemplateDictionary
    - Timing
    - TransitionRule
    range: ExtensionAttribute
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
class_uri: usdm:BiomedicalConceptCategory