Class: Biomedical Concept (BiomedicalConcept)

A unit of biomedical knowledge created from a unique combination of characteristics that include implementation details like variables and terminologies, used as building blocks for standardized, hierarchically structured clinical research information.

URI: https://example.org/usdm/v4/linkml/BiomedicalConcept

 classDiagram
    class BiomedicalConcept
    click BiomedicalConcept href "../../classes/BiomedicalConcept/"
      BiomedicalConcept : code





        BiomedicalConcept --> "1" AliasCode : code
        click AliasCode href "../../classes/AliasCode/"



      BiomedicalConcept : extensionAttributes





        BiomedicalConcept --> "*" ExtensionAttribute : extensionAttributes
        click ExtensionAttribute href "../../classes/ExtensionAttribute/"



      BiomedicalConcept : id

      BiomedicalConcept : label

      BiomedicalConcept : name

      BiomedicalConcept : notes





        BiomedicalConcept --> "*" CommentAnnotation : notes
        click CommentAnnotation href "../../classes/CommentAnnotation/"



      BiomedicalConcept : properties





        BiomedicalConcept --> "*" BiomedicalConceptProperty : properties
        click BiomedicalConceptProperty href "../../classes/BiomedicalConceptProperty/"



      BiomedicalConcept : reference

      BiomedicalConcept : synonyms

Class Properties

Property Value
Class URI usdm:BiomedicalConcept

Slots

Name Cardinality and Range Description Inheritance
id 1
string		 direct
name 1
string		 The literal identifier (i.e., distinctive designation) of the biomedical concept. direct
label 0..1
string		 The short descriptive designation for the biomedical concept. direct
synonyms *
string		 A word or an expression that serves as a figurative, symbolic, or exact substitute for a biomedical concept, and which has the same meaning. direct
reference 1
string		 A citation to an authoritative source for a biomedical concept. direct
code 1
AliasCode		 A concept unique identifier assigned to a biomedical concept that points to the meaning of that biomedical concept. direct
notes *
CommentAnnotation		 A brief written record relevant to the biomedical concept. direct
properties *
BiomedicalConceptProperty		 A USDM relationship between the BiomedicalConcept and BiomedicalConceptProperty classes which identifies the set of properties associated with the biomedical concept. direct
extensionAttributes *
ExtensionAttribute		 direct

Usages

used by used in type used
Activity biomedicalConceptIds range BiomedicalConcept
BiomedicalConceptCategory memberIds range BiomedicalConcept
Condition appliesToIds any_of[range] BiomedicalConcept
StudyVersion biomedicalConcepts range BiomedicalConcept

Identifier and Mapping Information

Schema Source

  • from schema: https://example.org/usdm/v4/linkml

Mappings

Mapping Type Mapped Value
self https://example.org/usdm/v4/linkml/BiomedicalConcept
native https://example.org/usdm/v4/linkml/BiomedicalConcept
exact ncit:C201345

LinkML Source

Direct

name: BiomedicalConcept
description: A unit of biomedical knowledge created from a unique combination of characteristics
  that include implementation details like variables and terminologies, used as building
  blocks for standardized, hierarchically structured clinical research information.
title: Biomedical Concept
from_schema: https://example.org/usdm/v4/linkml
exact_mappings:
- ncit:C201345
rank: 1000
attributes:
  id:
    name: id
    from_schema: https://example.org/usdm/v4/linkml
    identifier: true
    domain_of:
    - Abbreviation
    - Activity
    - Address
    - AdministrableProduct
    - AdministrableProductProperty
    - Administration
    - AliasCode
    - AnalysisPopulation
    - AssignedPerson
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - BiomedicalConceptSurrogate
    - BiospecimenRetention
    - Code
    - CommentAnnotation
    - ConditionAssignment
    - DocumentContentReference
    - Duration
    - EligibilityCriterion
    - Encounter
    - Estimand
    - ExtensionAttribute
    - ExtensionClass
    - GeographicScope
    - GovernanceDate
    - Identifier
    - Indication
    - Ingredient
    - Masking
    - MedicalDevice
    - NarrativeContent
    - NarrativeContentItem
    - Organization
    - ParameterMap
    - PersonName
    - PopulationDefinition
    - Procedure
    - ProductOrganizationRole
    - QuantityRange
    - ResponseCode
    - ScheduleTimeline
    - ScheduleTimelineExit
    - ScheduledInstance
    - Strength
    - Study
    - StudyAmendment
    - StudyAmendmentImpact
    - StudyAmendmentReason
    - StudyArm
    - StudyCell
    - StudyChange
    - StudyDefinitionDocument
    - StudyDefinitionDocumentVersion
    - StudyDesign
    - StudyElement
    - StudyEpoch
    - StudyIntervention
    - StudyRole
    - StudySite
    - StudyTitle
    - StudyVersion
    - SubjectEnrollment
    - Substance
    - SyntaxTemplate
    - SyntaxTemplateDictionary
    - Timing
    - TransitionRule
    range: string
    required: true
  name:
    name: name
    description: The literal identifier (i.e., distinctive designation) of the biomedical
      concept.
    title: Biomedical Concept Name
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C201312
    domain_of:
    - Activity
    - AdministrableProduct
    - AdministrableProductProperty
    - Administration
    - AnalysisPopulation
    - AssignedPerson
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - BiomedicalConceptSurrogate
    - BiospecimenRetention
    - EligibilityCriterion
    - Encounter
    - Estimand
    - GovernanceDate
    - Indication
    - MedicalDevice
    - NarrativeContent
    - NarrativeContentItem
    - Organization
    - PopulationDefinition
    - Procedure
    - ProductOrganizationRole
    - ResponseCode
    - ScheduleTimeline
    - ScheduledInstance
    - Strength
    - Study
    - StudyAmendment
    - StudyArm
    - StudyChange
    - StudyDefinitionDocument
    - StudyDesign
    - StudyElement
    - StudyEpoch
    - StudyIntervention
    - StudyRole
    - StudySite
    - SubjectEnrollment
    - Substance
    - SyntaxTemplate
    - SyntaxTemplateDictionary
    - Timing
    - TransitionRule
    range: string
    required: true
  label:
    name: label
    description: The short descriptive designation for the biomedical concept.
    title: Biomedical Concept Label
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C207470
    domain_of:
    - Activity
    - AdministrableProduct
    - Administration
    - AnalysisPopulation
    - AssignedPerson
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - BiomedicalConceptSurrogate
    - BiospecimenRetention
    - EligibilityCriterion
    - Encounter
    - Estimand
    - GovernanceDate
    - Indication
    - MedicalDevice
    - Organization
    - PopulationDefinition
    - Procedure
    - ProductOrganizationRole
    - ResponseCode
    - ScheduleTimeline
    - ScheduledInstance
    - Strength
    - Study
    - StudyAmendment
    - StudyArm
    - StudyChange
    - StudyDefinitionDocument
    - StudyDesign
    - StudyElement
    - StudyEpoch
    - StudyIntervention
    - StudyRole
    - StudySite
    - SubjectEnrollment
    - Substance
    - SyntaxTemplate
    - SyntaxTemplateDictionary
    - Timing
    - TransitionRule
    range: string
    required: false
  synonyms:
    name: synonyms
    description: A word or an expression that serves as a figurative, symbolic, or
      exact substitute for a biomedical concept, and which has the same meaning.
    title: Biomedical Concept Synonym
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C201314
    rank: 1000
    domain_of:
    - BiomedicalConcept
    range: string
    required: false
    multivalued: true
  reference:
    name: reference
    description: A citation to an authoritative source for a biomedical concept.
    title: Biomedical Concept Reference
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C201313
    rank: 1000
    domain_of:
    - BiomedicalConcept
    - BiomedicalConceptSurrogate
    - ParameterMap
    range: string
    required: true
  code:
    name: code
    description: A concept unique identifier assigned to a biomedical concept that
      points to the meaning of that biomedical concept.
    title: Biomedical Concept Concept Code
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C207469
    rank: 1000
    domain_of:
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - Code
    - GeographicScope
    - Procedure
    - ProductOrganizationRole
    - ResponseCode
    - StudyAmendmentReason
    - StudyRole
    range: AliasCode
    required: true
    inlined: true
  notes:
    name: notes
    description: A brief written record relevant to the biomedical concept.
    title: Biomedical Concept Notes
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C215530
    domain_of:
    - Abbreviation
    - Activity
    - AdministrableProduct
    - Administration
    - AnalysisPopulation
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - BiomedicalConceptSurrogate
    - EligibilityCriterion
    - Encounter
    - Estimand
    - Indication
    - MedicalDevice
    - PopulationDefinition
    - Procedure
    - StudyAmendment
    - StudyAmendmentImpact
    - StudyArm
    - StudyDefinitionDocument
    - StudyDefinitionDocumentVersion
    - StudyDesign
    - StudyElement
    - StudyEpoch
    - StudyIntervention
    - StudyRole
    - StudyVersion
    - SyntaxTemplate
    range: CommentAnnotation
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
  properties:
    name: properties
    description: A USDM relationship between the BiomedicalConcept and BiomedicalConceptProperty
      classes which identifies the set of properties associated with the biomedical
      concept.
    from_schema: https://example.org/usdm/v4/linkml
    domain_of:
    - AdministrableProduct
    - BiomedicalConcept
    range: BiomedicalConceptProperty
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
  extensionAttributes:
    name: extensionAttributes
    from_schema: https://example.org/usdm/v4/linkml
    domain_of:
    - Abbreviation
    - Activity
    - Address
    - AdministrableProduct
    - AdministrableProductIdentifier
    - AdministrableProductProperty
    - Administration
    - AliasCode
    - AnalysisPopulation
    - AssignedPerson
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - BiomedicalConceptSurrogate
    - BiospecimenRetention
    - Characteristic
    - Code
    - CommentAnnotation
    - Condition
    - ConditionAssignment
    - DocumentContentReference
    - Duration
    - EligibilityCriterion
    - EligibilityCriterionItem
    - Encounter
    - Endpoint
    - Estimand
    - ExtensionAttribute
    - ExtensionClass
    - GeographicScope
    - GovernanceDate
    - Indication
    - Ingredient
    - IntercurrentEvent
    - InterventionalStudyDesign
    - Masking
    - MedicalDevice
    - MedicalDeviceIdentifier
    - NarrativeContent
    - NarrativeContentItem
    - Objective
    - ObservationalStudyDesign
    - Organization
    - ParameterMap
    - PersonName
    - Procedure
    - ProductOrganizationRole
    - Quantity
    - Range
    - ReferenceIdentifier
    - ResponseCode
    - ScheduleTimeline
    - ScheduleTimelineExit
    - ScheduledActivityInstance
    - ScheduledDecisionInstance
    - Strength
    - Study
    - StudyAmendment
    - StudyAmendmentImpact
    - StudyAmendmentReason
    - StudyArm
    - StudyCell
    - StudyChange
    - StudyCohort
    - StudyDefinitionDocument
    - StudyDefinitionDocumentVersion
    - StudyDesignPopulation
    - StudyElement
    - StudyEpoch
    - StudyIdentifier
    - StudyIntervention
    - StudyRole
    - StudySite
    - StudyTitle
    - StudyVersion
    - SubjectEnrollment
    - Substance
    - SyntaxTemplateDictionary
    - Timing
    - TransitionRule
    range: ExtensionAttribute
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
class_uri: usdm:BiomedicalConcept

Induced

name: BiomedicalConcept
description: A unit of biomedical knowledge created from a unique combination of characteristics
  that include implementation details like variables and terminologies, used as building
  blocks for standardized, hierarchically structured clinical research information.
title: Biomedical Concept
from_schema: https://example.org/usdm/v4/linkml
exact_mappings:
- ncit:C201345
rank: 1000
attributes:
  id:
    name: id
    from_schema: https://example.org/usdm/v4/linkml
    identifier: true
    alias: id
    owner: BiomedicalConcept
    domain_of:
    - Abbreviation
    - Activity
    - Address
    - AdministrableProduct
    - AdministrableProductProperty
    - Administration
    - AliasCode
    - AnalysisPopulation
    - AssignedPerson
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - BiomedicalConceptSurrogate
    - BiospecimenRetention
    - Code
    - CommentAnnotation
    - ConditionAssignment
    - DocumentContentReference
    - Duration
    - EligibilityCriterion
    - Encounter
    - Estimand
    - ExtensionAttribute
    - ExtensionClass
    - GeographicScope
    - GovernanceDate
    - Identifier
    - Indication
    - Ingredient
    - Masking
    - MedicalDevice
    - NarrativeContent
    - NarrativeContentItem
    - Organization
    - ParameterMap
    - PersonName
    - PopulationDefinition
    - Procedure
    - ProductOrganizationRole
    - QuantityRange
    - ResponseCode
    - ScheduleTimeline
    - ScheduleTimelineExit
    - ScheduledInstance
    - Strength
    - Study
    - StudyAmendment
    - StudyAmendmentImpact
    - StudyAmendmentReason
    - StudyArm
    - StudyCell
    - StudyChange
    - StudyDefinitionDocument
    - StudyDefinitionDocumentVersion
    - StudyDesign
    - StudyElement
    - StudyEpoch
    - StudyIntervention
    - StudyRole
    - StudySite
    - StudyTitle
    - StudyVersion
    - SubjectEnrollment
    - Substance
    - SyntaxTemplate
    - SyntaxTemplateDictionary
    - Timing
    - TransitionRule
    range: string
    required: true
  name:
    name: name
    description: The literal identifier (i.e., distinctive designation) of the biomedical
      concept.
    title: Biomedical Concept Name
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C201312
    alias: name
    owner: BiomedicalConcept
    domain_of:
    - Activity
    - AdministrableProduct
    - AdministrableProductProperty
    - Administration
    - AnalysisPopulation
    - AssignedPerson
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - BiomedicalConceptSurrogate
    - BiospecimenRetention
    - EligibilityCriterion
    - Encounter
    - Estimand
    - GovernanceDate
    - Indication
    - MedicalDevice
    - NarrativeContent
    - NarrativeContentItem
    - Organization
    - PopulationDefinition
    - Procedure
    - ProductOrganizationRole
    - ResponseCode
    - ScheduleTimeline
    - ScheduledInstance
    - Strength
    - Study
    - StudyAmendment
    - StudyArm
    - StudyChange
    - StudyDefinitionDocument
    - StudyDesign
    - StudyElement
    - StudyEpoch
    - StudyIntervention
    - StudyRole
    - StudySite
    - SubjectEnrollment
    - Substance
    - SyntaxTemplate
    - SyntaxTemplateDictionary
    - Timing
    - TransitionRule
    range: string
    required: true
  label:
    name: label
    description: The short descriptive designation for the biomedical concept.
    title: Biomedical Concept Label
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C207470
    alias: label
    owner: BiomedicalConcept
    domain_of:
    - Activity
    - AdministrableProduct
    - Administration
    - AnalysisPopulation
    - AssignedPerson
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - BiomedicalConceptSurrogate
    - BiospecimenRetention
    - EligibilityCriterion
    - Encounter
    - Estimand
    - GovernanceDate
    - Indication
    - MedicalDevice
    - Organization
    - PopulationDefinition
    - Procedure
    - ProductOrganizationRole
    - ResponseCode
    - ScheduleTimeline
    - ScheduledInstance
    - Strength
    - Study
    - StudyAmendment
    - StudyArm
    - StudyChange
    - StudyDefinitionDocument
    - StudyDesign
    - StudyElement
    - StudyEpoch
    - StudyIntervention
    - StudyRole
    - StudySite
    - SubjectEnrollment
    - Substance
    - SyntaxTemplate
    - SyntaxTemplateDictionary
    - Timing
    - TransitionRule
    range: string
    required: false
  synonyms:
    name: synonyms
    description: A word or an expression that serves as a figurative, symbolic, or
      exact substitute for a biomedical concept, and which has the same meaning.
    title: Biomedical Concept Synonym
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C201314
    rank: 1000
    alias: synonyms
    owner: BiomedicalConcept
    domain_of:
    - BiomedicalConcept
    range: string
    required: false
    multivalued: true
  reference:
    name: reference
    description: A citation to an authoritative source for a biomedical concept.
    title: Biomedical Concept Reference
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C201313
    rank: 1000
    alias: reference
    owner: BiomedicalConcept
    domain_of:
    - BiomedicalConcept
    - BiomedicalConceptSurrogate
    - ParameterMap
    range: string
    required: true
  code:
    name: code
    description: A concept unique identifier assigned to a biomedical concept that
      points to the meaning of that biomedical concept.
    title: Biomedical Concept Concept Code
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C207469
    rank: 1000
    alias: code
    owner: BiomedicalConcept
    domain_of:
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - Code
    - GeographicScope
    - Procedure
    - ProductOrganizationRole
    - ResponseCode
    - StudyAmendmentReason
    - StudyRole
    range: AliasCode
    required: true
    inlined: true
  notes:
    name: notes
    description: A brief written record relevant to the biomedical concept.
    title: Biomedical Concept Notes
    from_schema: https://example.org/usdm/v4/linkml
    exact_mappings:
    - ncit:C215530
    alias: notes
    owner: BiomedicalConcept
    domain_of:
    - Abbreviation
    - Activity
    - AdministrableProduct
    - Administration
    - AnalysisPopulation
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - BiomedicalConceptSurrogate
    - EligibilityCriterion
    - Encounter
    - Estimand
    - Indication
    - MedicalDevice
    - PopulationDefinition
    - Procedure
    - StudyAmendment
    - StudyAmendmentImpact
    - StudyArm
    - StudyDefinitionDocument
    - StudyDefinitionDocumentVersion
    - StudyDesign
    - StudyElement
    - StudyEpoch
    - StudyIntervention
    - StudyRole
    - StudyVersion
    - SyntaxTemplate
    range: CommentAnnotation
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
  properties:
    name: properties
    description: A USDM relationship between the BiomedicalConcept and BiomedicalConceptProperty
      classes which identifies the set of properties associated with the biomedical
      concept.
    from_schema: https://example.org/usdm/v4/linkml
    alias: properties
    owner: BiomedicalConcept
    domain_of:
    - AdministrableProduct
    - BiomedicalConcept
    range: BiomedicalConceptProperty
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
  extensionAttributes:
    name: extensionAttributes
    from_schema: https://example.org/usdm/v4/linkml
    alias: extensionAttributes
    owner: BiomedicalConcept
    domain_of:
    - Abbreviation
    - Activity
    - Address
    - AdministrableProduct
    - AdministrableProductIdentifier
    - AdministrableProductProperty
    - Administration
    - AliasCode
    - AnalysisPopulation
    - AssignedPerson
    - BiomedicalConcept
    - BiomedicalConceptCategory
    - BiomedicalConceptProperty
    - BiomedicalConceptSurrogate
    - BiospecimenRetention
    - Characteristic
    - Code
    - CommentAnnotation
    - Condition
    - ConditionAssignment
    - DocumentContentReference
    - Duration
    - EligibilityCriterion
    - EligibilityCriterionItem
    - Encounter
    - Endpoint
    - Estimand
    - ExtensionAttribute
    - ExtensionClass
    - GeographicScope
    - GovernanceDate
    - Indication
    - Ingredient
    - IntercurrentEvent
    - InterventionalStudyDesign
    - Masking
    - MedicalDevice
    - MedicalDeviceIdentifier
    - NarrativeContent
    - NarrativeContentItem
    - Objective
    - ObservationalStudyDesign
    - Organization
    - ParameterMap
    - PersonName
    - Procedure
    - ProductOrganizationRole
    - Quantity
    - Range
    - ReferenceIdentifier
    - ResponseCode
    - ScheduleTimeline
    - ScheduleTimelineExit
    - ScheduledActivityInstance
    - ScheduledDecisionInstance
    - Strength
    - Study
    - StudyAmendment
    - StudyAmendmentImpact
    - StudyAmendmentReason
    - StudyArm
    - StudyCell
    - StudyChange
    - StudyCohort
    - StudyDefinitionDocument
    - StudyDefinitionDocumentVersion
    - StudyDesignPopulation
    - StudyElement
    - StudyEpoch
    - StudyIdentifier
    - StudyIntervention
    - StudyRole
    - StudySite
    - StudyTitle
    - StudyVersion
    - SubjectEnrollment
    - Substance
    - SyntaxTemplateDictionary
    - Timing
    - TransitionRule
    range: ExtensionAttribute
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
class_uri: usdm:BiomedicalConcept